molecular
Class MolecularPiston

java.lang.Object
  java.awt.Component
      java.awt.Container
          java.awt.Panel
              java.applet.Applet
                  edu.davidson.tools.SApplet
                      molecular.MolecularPiston

All Implemented Interfaces:

javax.accessibility.Accessible, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable

public class MolecularPiston

extends SApplet

Class MolecularPiston

See Also:

Serialized Form

Field Summary

Fields inherited from class edu.davidson.tools.SApplet

destroyed

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Method Summary

void	addCaption(java.lang.String cap) Adds a title to ensemble in top-center
int	addParticle(double xin, double yin, double xvel, double yvel, double r) Adds one particle to the ensemble
int	addParticleDataSource(int i) Method addParticleDataSource
void	createParticles(int n) Method createParticles
void	forward() Start the animation
double	getBWPos() Returns the bottom wall position
int	getEnsembleID() Returns the id of the ensemble.
int	getHistogramID(int nbins, double vmin, double vmax) Returns the id of the velocity histogram.
double	getLWPos() Returns the left wall position
int	getParticleID(int i) Returns the object identifier of the particle.
double	getPistonPos() Method getPistonPos
double	getRWPos() Returns the right wall position
double	getTWPos() Returns the top wall position
void	pause() Stop the animation
void	removeParticle(int i) Removes ith particle from ensemble
void	removeWallTemp(java.lang.String wall) Method removeWallTemp
void	setAutoRefresh(boolean ar) Method setAutoRefresh
void	setBackgroundRGB(int r, int g, int b) Sets Background color inside piston
void	setBG2Color(int r, int g, int b) Sets Background color above piston head
void	setBoltzmann(double kb) Method setBoltzmann
void	setBorderWidth(int w) Method setBorderWidth
void	setConstrainIsothermal(boolean tf) Method constrains the temperature of the ensemble to a fixed value.
void	setDefault() Method setDefault
void	setDefaultColor(int r, int g, int b) Sets default color when adding new particles.
void	setDefaultMass(double m) Sets default mass when adding new particles.
void	setDefaultPiston() Method setDefaultPiston
void	setDefaultSize(double r) Sets default size when adding new particles.
void	setDefaultTemp(double t) Method setDefaultTemp
void	setDelay(int delay) Sets calculation time delay
void	setDisplayOffset(int xoff, int yoff) Sets offsets for title
void	setDragable(boolean d) Method allows the piston to be dragable
void	setDt(double dt) Sets calculation time step
void	setFPS(int fps) Sets frames per second of animation
void	setGravity(double gr) Sets Gravitational constant that acts on piston
void	setInitialPistonPos(double h) Method setInitialPistonPos
void	setKE(double k) Puts value in kinetic energy field
void	setMaxParticles(int p) Sets maximum number of particles that can be stored in arrays
void	setMessage(java.lang.String msg) Adds a message to small yellow box opposite coordinate display.
void	setMinPistonHeight(double h) Method sets minimum piston height for piston when dragging.
void	setOrientation(java.lang.String or) Method setOrientation
void	setParticleMass(int i, double m) Sets mass of particle default value is 1 unit.
void	setParticlePos(int i, double xin, double yin) Sets Position of particle
void	setParticleRGB(int i, int rd, int gr, int bl) Sets color of particle
void	setParticles(int n) Method setParticles
void	setParticleVel(int i, double xvel, double yvel) Sets Velocity of particle
void	setPeriodicH(boolean p) Sets Periodic periodic boundary conditions
void	setPeriodicV(boolean p) Sets Periodic periodic boundary conditions
void	setPiston(java.lang.String str, boolean parsemode) Method setPiston
void	setPistonMass(double m) Sets Mass of piston
void	setPistonWidth(int pw) Sets width of piston
void	setPpu(int p) Sets pixels per unit of ensemble
void	setRGB(int r, int g, int b) Sets color of title
void	setShowControls(boolean s) Shows or hides control panel
void	setTemp(double temp) Set the temperature of the ensemble in 1 step.
void	setTemperature(double temp, int steps) Set the temperature of the ensemble in n steps.
void	setVolume(double vol, int steps) Move the piston to set the volume for the ensemble.
void	setVolumeIsothermal(double vol, int steps) Move the piston to set the volume for the ensemble.
void	setWallTemp(java.lang.String wall, double t) Sets Velocity of particle
void	stepForward() Steps simulation forward one time step

Methods inherited from class edu.davidson.tools.SApplet

addDataListener, addDataSource, checkAppletNames, cleanupDataConnections, clearAllData, clearData, deleteDataConnection, deleteDataConnections, formatValue, getAppletName, getClockID, getClockTime, getDataFromDS, getDataListener, getDataSource, getDataSource, getDebugLevel, getID, getSourceData, getSourceVariables, isClockRunning, isValidFunction, makeDataConnection, removeDataListener, removeDataSource, reset, reverse, sendDataToListener, setClockContinous, setClockCycle, setClockOneShot, setClockTime, setConnectionBlock, setConnectionListener, setConnectionSmoothing, setConnectionSource, setConnectionStride, setConnectionWindowX, setConnectionWindowY, setDebugLevel, setExternalClock, setFPS, setIndependentClock, setTimeContinuous, setTimeCycle, setTimeOneShot, startClock, stepClock, stepTime, stepTimeBack, stepTimeForward, stop, stopClock, updateDataConnection, updateDataConnections

Methods inherited from class java.applet.Applet

destroy, getAccessibleContext, getAppletContext, getAppletInfo, getAudioClip, getAudioClip, getCodeBase, getDocumentBase, getImage, getImage, getLocale, getParameter, getParameterInfo, init, isActive, newAudioClip, play, play, resize, resize, setStub, showStatus, start

Methods inherited from class java.awt.Panel

addNotify

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getInsets, getLayout, getListeners, getMaximumSize, getMinimumSize, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, remove, remove, removeAll, removeContainerListener, removeNotify, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setFont, setLayout, transferFocusBackward, transferFocusDownCycle, update, validate

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, dispatchEvent, enable, enable, enableInputMethods, getBackground, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphics, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getToolkit, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isOpaque, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, printAll, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, requestFocusInWindow, reshape, setBackground, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, setVisible, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Method Detail

setShowControls

public void setShowControls(boolean s)

Shows or hides control panel

Parameters:

s - boolean

pause

public void pause()

Stop the animation

Overrides:

pause in class SApplet

forward

public void forward()

Start the animation

Overrides:

forward in class SApplet

stepForward

public void stepForward()

Steps simulation forward one time step

addParticle

public int addParticle(double xin,
                       double yin,
                       double xvel,
                       double yvel,
                       double r)

Adds one particle to the ensemble

Parameters:

xin - double initial xposition

yin - double initial yposition

xvel - double initial x-velocity

yvel - double initial y-velocity

r - double particle radius

Returns:

int particle number

createParticles

public void createParticles(int n)

Method createParticles

Parameters:

n -

addParticleDataSource

public int addParticleDataSource(int i)

Method addParticleDataSource

Parameters:

i -

Returns:

the data source id

setParticleRGB

public void setParticleRGB(int i,
                           int rd,
                           int gr,
                           int bl)

Sets color of particle

Parameters:

i - int particle number

rd - int red value (<256)

gr - int green value (<256)

bl - int blue value (<256)

setParticleMass

public void setParticleMass(int i,
                            double m)

Sets mass of particle default value is 1 unit.

Parameters:

i - int particle number

m - double mass.

setDefault

public void setDefault()

Method setDefault

Overrides:

setDefault in class SApplet

setMaxParticles

public void setMaxParticles(int p)

Sets maximum number of particles that can be stored in arrays

Parameters:

p - max particles

setAutoRefresh

public void setAutoRefresh(boolean ar)

Method setAutoRefresh

Overrides:

setAutoRefresh in class SApplet

Parameters:

ar -

setBorderWidth

public void setBorderWidth(int w)

Method setBorderWidth

Parameters:

w -

setBackgroundRGB

public void setBackgroundRGB(int r,
                             int g,
                             int b)

Sets Background color inside piston

Parameters:

r - int red

g - int green

b - int blue

setBG2Color

public void setBG2Color(int r,
                        int g,
                        int b)

Sets Background color above piston head

Parameters:

r - int red

g - int green

b - int blue

setDefaultMass

public void setDefaultMass(double m)

Sets default mass when adding new particles. All particles created after calling this method will have this mass

Parameters:

m - double mass

setDefaultSize

public void setDefaultSize(double r)

Sets default size when adding new particles. All particles created after calling this method will have this radius

Parameters:

r - double radius

setDefaultColor

public void setDefaultColor(int r,
                            int g,
                            int b)

Sets default color when adding new particles. All particles created after calling this method will have this color

Parameters:

r - int red

g - int green

b - int blue

setDefaultPiston

public void setDefaultPiston()

Method setDefaultPiston

setDefaultTemp

public void setDefaultTemp(double t)

Method setDefaultTemp

Parameters:

t -

setParticlePos

public void setParticlePos(int i,
                           double xin,
                           double yin)

Sets Position of particle

Parameters:

i - int particle number

xin - double initial x-position

yin - double initial y-position

setParticleVel

public void setParticleVel(int i,
                           double xvel,
                           double yvel)

Sets Velocity of particle

Parameters:

i - int particle number

xvel - double initial x-velocity

yvel - double initial y-velocity

setInitialPistonPos

public void setInitialPistonPos(double h)

Method setInitialPistonPos

Parameters:

h -

setBoltzmann

public void setBoltzmann(double kb)

Method setBoltzmann

Parameters:

kb -

setWallTemp

public void setWallTemp(java.lang.String wall,
                        double t)

Sets Velocity of particle

Parameters:

wall - string Which wall? [top, bottom, right, left]

t - double The wall temperature

removeWallTemp

public void removeWallTemp(java.lang.String wall)

Method removeWallTemp

Parameters:

wall -

setFPS

public void setFPS(int fps)

Sets frames per second of animation

Parameters:

fps - int

setDt

public void setDt(double dt)

Sets calculation time step

Overrides:

setDt in class SApplet

Parameters:

dt - double timestep

setDelay

public void setDelay(int delay)

Sets calculation time delay

Parameters:

delay - int delay milliseconds

removeParticle

public void removeParticle(int i)

Removes ith particle from ensemble

Parameters:

i - int particle number

setParticles

public void setParticles(int n)

Method setParticles

Parameters:

n -

setTemp

public void setTemp(double temp)

Set the temperature of the ensemble in 1 step.

Parameters:

temp - double The new temperature.

setTemperature

public void setTemperature(double temp,
                           int steps)

Set the temperature of the ensemble in n steps. Data will be sent to data listeners after each step.

Parameters:

temp - double The new temperature.

steps - int The number of steps.

setPpu

public void setPpu(int p)

Sets pixels per unit of ensemble

Parameters:

p - int

setPeriodicH

public void setPeriodicH(boolean p)

Sets Periodic periodic boundary conditions

Parameters:

p - boolean

setPeriodicV

public void setPeriodicV(boolean p)

Sets Periodic periodic boundary conditions

Parameters:

p - boolean

setKE

public void setKE(double k)

Puts value in kinetic energy field

Parameters:

k - double value to be inserted in field

setOrientation

public void setOrientation(java.lang.String or)

Method setOrientation

Parameters:

or -

setVolume

public void setVolume(double vol,
                      int steps)

Move the piston to set the volume for the ensemble.

Parameters:

vol - The new volume.

steps -

setVolumeIsothermal

public void setVolumeIsothermal(double vol,
                                int steps)

Move the piston to set the volume for the ensemble.

Parameters:

vol - The new volume.

steps -

setConstrainIsothermal

public void setConstrainIsothermal(boolean tf)

Method constrains the temperature of the ensemble to a fixed value. Used for isothermal expansion and compression when piston is moving.

Parameters:

tf - boolean

setMessage

public void setMessage(java.lang.String msg)

Adds a message to small yellow box opposite coordinate display.

Parameters:

msg - String

setDisplayOffset

public void setDisplayOffset(int xoff,
                             int yoff)

Sets offsets for title

Parameters:

xoff -

yoff -

setRGB

public void setRGB(int r,
                   int g,
                   int b)

Sets color of title

Parameters:

r - int red

g - int green

b - int blue

addCaption

public void addCaption(java.lang.String cap)

Adds a title to ensemble in top-center

Parameters:

cap - String

setDragable

public void setDragable(boolean d)

Method allows the piston to be dragable

Parameters:

d - boolean

setMinPistonHeight

public void setMinPistonHeight(double h)

Method sets minimum piston height for piston when dragging. Does not apply to normal piston opperation. Method protects against crushing particles and crashing program.

Parameters:

h - double height in units. (usually around 3 to 7)

setPiston

public void setPiston(java.lang.String str,
                      boolean parsemode)

Method setPiston

Parameters:

str -

parsemode -

getPistonPos

public double getPistonPos()

Method getPistonPos

Returns:

the position

getRWPos

public double getRWPos()

Returns the right wall position

Returns:

double

getLWPos

public double getLWPos()

Returns the left wall position

Returns:

double

getTWPos

public double getTWPos()

Returns the top wall position

Returns:

double

getBWPos

public double getBWPos()

Returns the bottom wall position

Returns:

double

getEnsembleID

public int getEnsembleID()

Returns the id of the ensemble. This id can be used to make data connections.

Returns:

int The id.

getHistogramID

public int getHistogramID(int nbins,
                          double vmin,
                          double vmax)

Returns the id of the velocity histogram. This id can be used to make data connections.

Parameters:

nbins - int The number of bins in the histogram.

vmin -

vmax -

Returns:

int The id.

getParticleID

public int getParticleID(int i)

Returns the object identifier of the particle. This id can be used to make data connections. Each particle has an index ranging from 0 to N-1 that specifies its postion in an array where N is the total number of particles. This index must be converted to an object identifier in order to make a data connection.

Parameters:

i - int the particle index.

Returns:

int the object identifier.

setPistonMass

public void setPistonMass(double m)

Sets Mass of piston

Parameters:

m - double new mass of piston

setPistonWidth

public void setPistonWidth(int pw)

Sets width of piston

Parameters:

pw - double new mass of piston

setGravity

public void setGravity(double gr)

Sets Gravitational constant that acts on piston

Parameters:

gr - double